sparrow.pl.preprocess_transcriptomics

sparrow.pl.preprocess_transcriptomics#

sparrow.pl.preprocess_transcriptomics(sdata, table_layer='table_transcriptomics', output=None)#

Function plots the size of the nucleus/cell related to the counts.

Parameters:

  • sdata (SpatialData) – SpatialData object containing the spatial data and annotations.

  • table_layer (str (default: 'table_transcriptomics')) – The table layer in sdata.

  • output (Optional[str] (default: None)) – The file path prefix for the plots (default is None).

Return type:

None

See also

sparrow.tb.preprocess_transcriptomics

preprocess.

Contents