Advanced tutorials

These tutorials are more advanced and require a deeper understanding of the SPArrOW API. They are intended for users who are already familiar with the basics of SPArrOW and want to learn more about specific features or use cases.

• Working with multiple samples and coordinate systems
• Using SPArrOW with a retrained Cellpose model
• 1. Using a pretrained Cellpose model
• 2. Acquiring the data for retraining
• 3. Retraining the Cellpose model
• Using multiple stains on Xenium data
• Read in data
• Cell segmentation: DAPI (only nuclei)
• Cell segmentation: hierarchical approach
• Cell segmentation: combined Cellpose