Skip to main content
Back to top
Ctrl
+
K
Installation
Usage
Tutorials
General tutorials
SPArrOW quickstart
SPArrOW, how to start
Advanced tutorials
Work with multiple samples (and coordinate systems)
HPC tutorials
High Performance Computing
High Performance Computing on the VIB Data Core Compute.
API
sparrow.io.create_sdata
sparrow.io.read_transcripts
sparrow.io.read_resolve_transcripts
sparrow.io.read_vizgen_transcripts
sparrow.io.read_stereoseq_transcripts
sparrow.im.add_image_layer
sparrow.im.add_labels_layer
sparrow.im.map_channels_zstacks
sparrow.im.tiling_correction
sparrow.im.enhance_contrast
sparrow.im.normalize
sparrow.im.min_max_filtering
sparrow.im.gaussian_filtering
sparrow.im.transcript_density
sparrow.im.combine
sparrow.im.segment
sparrow.im.segment_points
sparrow.im.add_grid_labels_layer
sparrow.im.expand_labels_layer
sparrow.im.align_labels_layers
sparrow.im.apply_labels_layers
sparrow.im.filter_labels_layer
sparrow.im.merge_labels_layers
sparrow.im.merge_labels_layers_nuclei
sparrow.im.rasterize
sparrow.im.mask_to_original
sparrow.im.pixel_clustering_preprocess
sparrow.im.flowsom
sparrow.sh.add_shapes_layer
sparrow.sh.filter_shapes_layer
sparrow.sh.create_voronoi_boundaries
sparrow.tb.add_table_layer
sparrow.tb.allocate
sparrow.tb.allocate_intensity
sparrow.tb.preprocess_transcriptomics
sparrow.tb.preprocess_proteomics
sparrow.tb.filter_on_size
sparrow.tb.leiden
sparrow.tb.kmeans
sparrow.tb.score_genes
sparrow.tb.score_genes_iter
sparrow.tb.correct_marker_genes
sparrow.tb.cluster_cleanliness
sparrow.tb.nhood_enrichment
sparrow.tb.add_regionprop_features
sparrow.tb.cluster_intensity
sparrow.tb.cell_clustering_preprocess
sparrow.tb.flowsom
sparrow.tb.weighted_channel_expression
sparrow.pt.add_points_layer
sparrow.pl.plot_image
sparrow.pl.plot_shapes
sparrow.pl.plot_labels
sparrow.pl.tiling_correction
sparrow.pl.flatfield
sparrow.pl.segment
sparrow.pl.snr_ratio
sparrow.pl.group_snr_ratio
sparrow.pl.snr_clustermap
sparrow.pl.signal_clustermap
sparrow.pl.clustermap
sparrow.pl.segmentation_coverage
sparrow.pl.segmentation_size_boxplot
sparrow.pl.segments_per_area
sparrow.pl.sanity_plot_transcripts_matrix
sparrow.pl.analyse_genes_left_out
sparrow.pl.transcript_density
sparrow.pl.preprocess_transcriptomics
sparrow.pl.cluster
sparrow.pl.score_genes
sparrow.pl.cluster_cleanliness
sparrow.pl.nhood_enrichment
sparrow.utils.bounding_box_query
sparrow.datasets.cluster_blobs
sparrow.datasets.multisample_blobs
sparrow.datasets.pixie_example
sparrow.datasets.macsima_example
sparrow.datasets.mibi_example
sparrow.datasets.vectra_example
sparrow.datasets.resolve_example
sparrow.datasets.get_registry
sparrow.datasets.get_spatialdata_registry
Development
Repository
Show source
Suggest edit
Open issue
.rst
.pdf
sparrow.pl.segmentation_coverage
Contents
segmentation_coverage()
sparrow.pl.segmentation_coverage
#
sparrow.pl.
segmentation_coverage
(
sdata
,
ax
=
None
,
**
kwargs
)
#
Contents
segmentation_coverage()
