Index A | B | C | E | F | G | K | L | M | N | P | R | S | T | V | X A add_grid_labels_layer() (in module sparrow.im) add_image_layer() (in module sparrow.im) add_labels_layer() (in module sparrow.im) add_points_layer() (in module sparrow.pt) add_regionprop_features() (in module sparrow.tb) add_shapes_layer() (in module sparrow.sh) add_table_layer() (in module sparrow.tb) aggregate_area() (sparrow.utils.RasterAggregator method) aggregate_custom_channel() (sparrow.utils.RasterAggregator method) aggregate_kurtosis() (sparrow.utils.RasterAggregator method) aggregate_max() (sparrow.utils.RasterAggregator method) aggregate_mean() (sparrow.utils.RasterAggregator method) aggregate_min() (sparrow.utils.RasterAggregator method) aggregate_quantiles() (sparrow.utils.RasterAggregator method) aggregate_radii_and_axes() (sparrow.utils.RasterAggregator method) aggregate_skew() (sparrow.utils.RasterAggregator method) aggregate_stats() (sparrow.utils.RasterAggregator method) aggregate_sum() (sparrow.utils.RasterAggregator method) aggregate_var() (sparrow.utils.RasterAggregator method) align_labels_layers() (in module sparrow.im) allocate() (in module sparrow.tb) allocate_intensity() (in module sparrow.tb) analyse_genes_left_out() (in module sparrow.pl) B baysor_callable() (in module sparrow.im) bounding_box_query() (in module sparrow.utils) C cellpose_callable() (in module sparrow.im) center_of_mass() (sparrow.utils.RasterAggregator method) cluster() (in module sparrow.pl) cluster_cleanliness() (in module sparrow.pl) (in module sparrow.tb) clustermap() (in module sparrow.pl) combine() (in module sparrow.im) correct_marker_genes() (in module sparrow.tb) create_sdata() (in module sparrow.io) create_voronoi_boundaries() (in module sparrow.sh) E enhance_contrast() (in module sparrow.im) expand_labels_layer() (in module sparrow.im) F filter_labels_layer() (in module sparrow.im) filter_on_size() (in module sparrow.tb) filter_shapes_layer() (in module sparrow.sh) flatfield() (in module sparrow.pl) G gaussian_filtering() (in module sparrow.im) get_registry() (in module sparrow.datasets) get_spatialdata_registry() (in module sparrow.datasets) group_snr_ratio() (in module sparrow.pl) K kmeans() (in module sparrow.tb) L leiden() (in module sparrow.tb) M mask_to_original() (in module sparrow.im) merge_labels_layers() (in module sparrow.im) merge_labels_layers_nuclei() (in module sparrow.im) merscope() (in module sparrow.io) min_max_filtering() (in module sparrow.im) module sparrow sparrow.datasets sparrow.im sparrow.io sparrow.pl, [1], [2] sparrow.pt sparrow.sh sparrow.tb sparrow.utils N nhood_enrichment() (in module sparrow.pl) (in module sparrow.tb) normalize() (in module sparrow.im) P plot_image() (in module sparrow.pl) plot_labels() (in module sparrow.pl) plot_shapes() (in module sparrow.pl) preprocess_proteomics() (in module sparrow.tb) preprocess_transcriptomics() (in module sparrow.pl) (in module sparrow.tb) R RasterAggregator (class in sparrow.utils) rasterize() (in module sparrow.im) read_merscope_transcripts() (in module sparrow.io) read_resolve_transcripts() (in module sparrow.io) read_stereoseq_transcripts() (in module sparrow.io) read_transcripts() (in module sparrow.io) resolve_example() (in module sparrow.datasets) S sanity() (in module sparrow.pl) score_genes() (in module sparrow.pl) (in module sparrow.tb) score_genes_iter() (in module sparrow.tb) segment() (in module sparrow.im) (in module sparrow.pl) segment_points() (in module sparrow.im) segmentation_coverage() (in module sparrow.pl) segmentation_size_boxplot() (in module sparrow.pl) segments_per_area() (in module sparrow.pl) signal_clustermap() (in module sparrow.pl) snr_clustermap() (in module sparrow.pl) snr_ratio() (in module sparrow.pl) sparrow module sparrow.datasets module sparrow.im module sparrow.io module sparrow.pl module, [1], [2] sparrow.pt module sparrow.sh module sparrow.tb module sparrow.utils module T tiling_correction() (in module sparrow.im) (in module sparrow.pl) transcript_density() (in module sparrow.im) (in module sparrow.pl) V vectorize() (in module sparrow.sh) visium_hd() (in module sparrow.io) visium_hd_example() (in module sparrow.datasets) X xenium() (in module sparrow.io)
